4.1.2.1. equilibrator_api.compatibility

Provide functions for compatibility with COBRA.

4.1.2.1.1. Module Contents

equilibrator_api.compatibility.map_cobra_reactions(cache: equilibrator_cache.CompoundCache, reactions: List[‘cobra.Reaction’], **kwargs) → Dict[str, PhasedReaction][source]

Translate COBRA reactions to eQuilibrator phased reactions.

Parameters

  • cache (equilibrator_cache.CompoundCache) –

  • reactions (iterable of cobra.Reaction) – A list of reactions to map to equilibrator phased reactions.

Other Parameters

kwargs – Any further keyword arguments are passed to the underlying function for mapping metabolites.

Returns

A mapping from COBRA reaction identifiers to equilibrator phased reactions where such a mapping can be established.

Return type

dict

See also

equilibrator_cache.compatibility.map_cobra_metabolites